Looking at the “damage” - it seems whoever removed them used a hard scraper and some sort of aggressive solvent. This is not damage from the googly eyes, but from the hands of the remover, who probably had too much caffeine and enthusiasm that day.

They are transcoding them into the video. Sponsorblock had to make a quick change to discard submissions from users that have been identified to be on this trial system, because it affects the video length, and as such - makes it impossible to have consistent segments